PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 394aa    MW: 43356.6 Da    PI: 8.3959
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112180.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++
  XP_010112180.1  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_010112180.1 111 IHRRKTA 117
                     ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VSLNHHHHHH HPHSHHQIGI NGPSFFPFSS TTGRVSISPS DSDDNPNNWS SCDSPPLMSS  180
PRGPTAAIVG GVSLGNFGGG GGGVTSSVTA LSEDNERLRR SNSMLMSELA HMRKLYNDII  240
YFVQNHVKPV APSNVSYPAA SPVLLCNASN GGGATNNASS VVLQKPLNQL FGYYPSGTTH  300
VNNPKVQLNN LHANHGGLNS PSTTAKSSVT ILEERNTTTN GCKTKLFGVP LHSKKRLHPE  360
YGSGNATNNM ENNKARLVLE KDDLGFNLMP PSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D7e-222111626131Heat shock factor protein 1
5d5v_B7e-222111626131Heat shock factor protein 1
5d5u_B7e-222111626131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.10.0Heat stress transcription factor B-4
SwissprotQ9C6351e-116HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA360.0W9SA36_9R
STRINGPOPTR_0002s12640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-104heat shock transcription factor B4